PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc05_g11430
Common NameGSCOC_T00021317001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family TCP
Protein Properties Length: 354aa    MW: 39425.6 Da    PI: 7.3188
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc05_g11430genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP121.78.5e-3852153296
          TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.......ssssasec.eaesssssasnsssgkaa 91 
                  +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak ai+el+++       +s +a+ + e++++ +++ +++ ++++
  Cc05_g11430  52 TGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKSAIDELAELpawhpttGSAAANTSfEQDQQAQKSRADNLQNQQ 149
                  79**************************************************************5554433111111111111111111112222222 PP

          TCP  92 ksaak 96 
                  +++  
  Cc05_g11430 150 QQH-L 153
                  222.2 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.9E-3152159IPR005333Transcription factor, TCP
PROSITE profilePS5136934.18754112IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MGENFHHHHQ LQQQQQQQPT TRQSSSRLSG LRNSTGAGEI VEVQGGHIVR STGRKDRHSK  60
VCTAKGPRDR RVRLSAHTAI QFYDVQDRLG YDRPSKAVDW LIKKAKSAID ELAELPAWHP  120
TTGSAAANTS FEQDQQAQKS RADNLQNQQQ QHLGGLHQTD SAANPSGNSS SFLPPSLDSD  180
SIADTIKSFF PMGASAEANS SAMQFQSFPP PDLLSRTSSH PQDLQLSLQS FQDPILLHHH  240
NQQQAQHHQN HPTSQHPEQA EALFSGNTQL GGYDAAAWSE HHQQPAELGR NCSAKTSFFL  300
RGDPFSPLIH LQFVLGWIHQ LYPSPLQIIT FHTIRQCCQF IHHRYLALDL PLE*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00062PBMTransfer from AT3G15030Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011082737.11e-110PREDICTED: transcription factor TCP4-like
RefseqXP_011082738.11e-110PREDICTED: transcription factor TCP4-like
SwissprotQ8LPR55e-82TCP4_ARATH; Transcription factor TCP4
TrEMBLA0A068UBV50.0A0A068UBV5_COFCA; Uncharacterized protein
STRINGPGSC0003DMT4000322683e-95(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32072349
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.32e-62TCP family protein